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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11257 and 11258 are separated by 271 nucleotides
11258 and 11259 are separated by 700 nucleotides
11259 and 11260 are separated by 715 nucleotides
11260 and 11261 are separated by 364 nucleotides
mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466,050 to 468,099
11257
mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468,371 to 468,835
11258
mRNA_2891: 11259 - Hypothetical Protein, at 469,536 to 470,476
11259
mRNA_2892: 11260 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 471,192 to 473,300
11260
mRNA_2893: 11261 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 473,665 to 474,267
11261
Group
Condition
mRNA
_2889
mRNA
_2890
mRNA
_2891
mRNA
_2892
mRNA
_2893
11257
11258
11259
11260
11261
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-2.6
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-1.4
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-1.3
-0.2
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.3
-0.1
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.8
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.7
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.6
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
-0.4
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.4
-0.1
-0.1
growth on ypd
YPD
-0.2
N.D.
-0.3
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.4
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
-0.5
-0.3
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+0.1
-0.2
+0.4
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.7
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.4
-0.3
+0.2
auxotrophy
Dropout Complete
-0.2
N.D.
+0.8
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+1.1
-0.1
+0.1
auxotrophy
YNB Glucose
-0.0
N.D.
+1.2
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.7
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+1.1
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
+1.9
+0.2
+0.4
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