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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11259 and 11260 are separated by 715 nucleotides
11260 and 11261 are separated by 364 nucleotides
11261 and 11262 are separated by 715 nucleotides
11262 and 11263 are separated by 215 nucleotides
mRNA_2891: 11259 - Hypothetical Protein, at 469,536 to 470,476
11259
mRNA_2892: 11260 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 471,192 to 473,300
11260
mRNA_2893: 11261 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 473,665 to 474,267
11261
mRNA_2894: 11262 - SUPERFAMILY--SSF52047, at 474,983 to 476,277
11262
mRNA_2895: 11263 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 476,493 to 477,623
11263
Group
Condition
mRNA
_2891
mRNA
_2892
mRNA
_2893
mRNA
_2894
mRNA
_2895
11259
11260
11261
11262
11263
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.1
-0.2
-0.7
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.0
-0.5
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-2.6
-0.1
+0.1
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
-1.8
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
-0.2
-0.5
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.3
-0.1
+0.1
-0.5
growth on ypd
YPD
-0.3
+0.1
-0.0
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.3
+0.4
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.3
-0.2
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.3
+0.6
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
+0.0
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
-0.1
+0.4
+0.3
growth on oleic acid
YNB Glucose
+0.7
-0.3
-0.0
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
+1.1
-0.1
+0.0
+0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.0
-0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
+0.4
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.3
+0.2
+0.7
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+1.1
-0.1
+0.1
+0.2
+0.0
auxotrophy
Dropout Complete
+0.8
-0.2
+0.2
+0.6
+0.1
auxotrophy
YNB Glucose
+1.2
-0.1
-0.1
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.9
+0.2
+0.4
+0.3
+0.1
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