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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11264 and 11265 are separated by 338 nucleotides
11265 and 11266 are separated by 106 nucleotides
11266 and 11267 are separated by 437 nucleotides
11267 and 11268 are separated by 1590 nucleotides
mRNA_2896: 11264 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 478,182 to 479,265
11264
mRNA_2897: 11265 - K12613 DCP2 mRNA-decapping enzyme subunit 2, at 479,604 to 482,899
11265
mRNA_2898: 11266 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 483,006 to 488,500
11266
mRNA_2899: 11267 - K15276 SLC35B2, PAPST1 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2, at 488,938 to 492,084
11267
mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493,675 to 494,245
11268
Group
Condition
mRNA
_2896
mRNA
_2897
mRNA
_2898
mRNA
_2899
mRNA
_2900
11264
11265
11266
11267
11268
auxotrophy
Dropout Complete
-0.4
-1.0
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.7
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-1.3
+0.1
-0.4
N.D.
auxotrophy
YNB Glucose
-0.7
-0.6
-0.1
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.3
+0.2
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.4
+0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.6
-0.4
-0.0
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.7
+0.0
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.0
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
-0.3
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
+0.0
-0.2
N.D.
growth on ypd
YPD
-0.4
+0.9
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.1
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.4
-0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.7
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.8
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
+0.7
+0.1
+0.1
N.D.
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