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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11267 and 11268 are separated by 1590 nucleotides
11268 and 11269 are separated by 671 nucleotides
11269 and 11270 are separated by 683 nucleotides
11270 and 11271 are separated by 149 nucleotides
mRNA_2899: 11267 - K15276 SLC35B2, PAPST1 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2, at 488,938 to 492,084
11267
mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493,675 to 494,245
11268
mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494,917 to 497,480
11269
mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498,164 to 500,409
11270
mRNA_2903: 11271 - K06662 HRAD17, RAD24 cell cycle checkpoint protein, at 500,559 to 503,580
11271
Group
Condition
mRNA
_2899
mRNA
_2900
mRNA
_2901
mRNA
_2902
mRNA
_2903
11267
11268
11269
11270
11271
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.4
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.0
+0.2
-0.6
auxotrophy
Dropout Complete
+0.1
N.D.
-0.1
-0.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.5
+0.2
-0.0
growth on ypd
YPD
-0.1
N.D.
+0.0
+0.2
-0.7
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.4
+0.1
-0.3
auxotrophy
YNB Glucose
+0.3
N.D.
+0.1
-0.0
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.3
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.2
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.3
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.4
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.1
+0.6
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.1
+0.3
-0.5
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.1
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
-0.2
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.5
-0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.2
+0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
+0.7
+0.6
-0.1
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