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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11269 and 11270 are separated by 683 nucleotides
11270 and 11271 are separated by 149 nucleotides
11271 and 11272 are separated by 166 nucleotides
11272 and 11273 are separated by 111 nucleotides
mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494,917 to 497,480
11269
mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498,164 to 500,409
11270
mRNA_2903: 11271 - K06662 HRAD17, RAD24 cell cycle checkpoint protein, at 500,559 to 503,580
11271
mRNA_2904: 11272 - K03847 ALG12 alpha-1,6-mannosyltransferase, at 503,747 to 505,698
11272
mRNA_2905: 11273 - Hypothetical Protein, at 505,810 to 506,740
11273
Group
Condition
mRNA
_2901
mRNA
_2902
mRNA
_2903
mRNA
_2904
mRNA
_2905
11269
11270
11271
11272
11273
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.3
-0.8
-1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
-0.3
-2.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.2
-0.0
-0.2
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.6
-0.7
-1.8
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.5
-1.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.0
-0.9
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
-0.1
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.6
-0.3
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.1
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.3
-0.5
+0.4
growth on ypd
YPD
+0.0
+0.2
-0.7
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.5
+0.0
-1.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
+0.2
+0.0
growth on oleic acid
YNB Glucose
-0.4
+0.1
-0.3
+0.3
+0.5
auxotrophy
Dropout Complete
-0.1
-0.0
-0.6
+0.6
+1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.6
+0.2
+1.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
-0.4
+0.2
+1.4
auxotrophy
YNB Glucose
+0.1
-0.0
-0.8
+0.6
+1.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.4
+0.7
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.0
+0.3
+1.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.6
-0.1
+0.1
+0.9
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