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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11272 and 11273 are separated by 111 nucleotides
11273 and 11274 are separated by 1892 nucleotides
11274 and 11275 are separated by 928 nucleotides
11275 and 11276 are separated by 104 nucleotides
mRNA_2904: 11272 - K03847 ALG12 alpha-1,6-mannosyltransferase, at 503,747 to 505,698
11272
mRNA_2905: 11273 - Hypothetical Protein, at 505,810 to 506,740
11273
mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508,633 to 509,349
11274
mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510,278 to 512,745
11275
mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512,850 to 515,031
11276
Group
Condition
mRNA
_2904
mRNA
_2905
mRNA
_2906
mRNA
_2907
mRNA
_2908
11272
11273
11274
11275
11276
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.4
+0.3
N.D.
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
+0.1
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.4
-0.1
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
+0.4
N.D.
-0.5
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-1.4
N.D.
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.1
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-1.2
N.D.
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.5
+0.4
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
N.D.
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.9
N.D.
-0.5
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.5
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
N.D.
+0.3
+0.0
growth on ypd
YPD
+0.2
+0.1
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+1.4
N.D.
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.4
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.7
+0.7
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+1.4
N.D.
+0.0
-0.0
auxotrophy
Dropout Complete
+0.6
+1.0
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
+0.6
+1.3
N.D.
+0.0
-0.1
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