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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11274 and 11275 are separated by 928 nucleotides
11275 and 11276 are separated by 104 nucleotides
11276 and 11277 are separated by 421 nucleotides
11277 and 11278 are separated by 220 nucleotides
mRNA_2906: 11274 - K02960 RP-S16e, RPS16 small subunit ribosomal protein S16e, at 508,633 to 509,349
11274
mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510,278 to 512,745
11275
mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512,850 to 515,031
11276
mRNA_2909: 11277 - Hypothetical Protein, at 515,453 to 516,872
11277
mRNA_2910: 11278 - K03657 uvrD, pcrA DNA helicase II / ATP-dependent DNA helicase PcrA, at 517,093 to 520,320
11278
Group
Condition
mRNA
_2906
mRNA
_2907
mRNA
_2908
mRNA
_2909
mRNA
_2910
11274
11275
11276
11277
11278
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.2
-0.5
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.2
-0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.4
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
-0.1
-0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.2
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
-0.2
+0.1
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.3
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.0
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.0
+0.1
-0.0
auxotrophy
Dropout Complete
N.D.
+0.2
-0.1
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.0
+0.1
-0.2
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.1
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.0
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
+0.1
-0.0
growth on ypd
YPD
N.D.
+0.4
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
+0.3
+0.2
+0.2
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