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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11275 and 11276 are separated by 104 nucleotides
11276 and 11277 are separated by 421 nucleotides
11277 and 11278 are separated by 220 nucleotides
11278 and 11279 are separated by 149 nucleotides
mRNA_2907: 11275 - HMMPfam-FAD dependent oxidoreductase-PF01266,SUPERFAMILY--SSF51971, at 510,278 to 512,745
11275
mRNA_2908: 11276 - KOG3098 Uncharacterized conserved protein, at 512,850 to 515,031
11276
mRNA_2909: 11277 - Hypothetical Protein, at 515,453 to 516,872
11277
mRNA_2910: 11278 - K03657 uvrD, pcrA DNA helicase II / ATP-dependent DNA helicase PcrA, at 517,093 to 520,320
11278
mRNA_2911: 11279 - BLAST ATP-dependent DNA helicase [Trichosporon asahii v..., at 520,470 to 521,587
11279
Group
Condition
mRNA
_2907
mRNA
_2908
mRNA
_2909
mRNA
_2910
mRNA
_2911
11275
11276
11277
11278
11279
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.5
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.4
-0.3
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.5
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.2
+0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-0.5
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
-0.2
-0.1
-0.0
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.4
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.3
+0.2
+0.2
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.1
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
-0.3
+0.2
+0.2
auxotrophy
Dropout Complete
+0.2
-0.1
-0.3
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
+0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.0
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.1
-0.0
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
-0.2
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.0
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.2
-0.0
+0.8
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
+0.2
-0.1
+0.4
auxotrophy
YNB Glucose
+0.0
-0.1
+0.1
+0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.1
-0.0
+0.5
growth on ypd
YPD
+0.4
-0.1
+0.3
+0.1
+0.5
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