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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11277 and 11278 are separated by 220 nucleotides
11278 and 11279 are separated by 149 nucleotides
11279 and 11280 are separated by 365 nucleotides
11280 and 11281 are separated by 288 nucleotides
mRNA_2909: 11277 - Hypothetical Protein, at 515,453 to 516,872
11277
mRNA_2910: 11278 - K03657 uvrD, pcrA DNA helicase II / ATP-dependent DNA helicase PcrA, at 517,093 to 520,320
11278
mRNA_2911: 11279 - BLAST ATP-dependent DNA helicase [Trichosporon asahii v..., at 520,470 to 521,587
11279
mRNA_2912: 11280 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 521,953 to 523,755
11280
mRNA_2913: 11281 - K13703 ABHD11 abhydrolase domain-containing protein 11, at 524,044 to 525,341
11281
Group
Condition
mRNA
_2909
mRNA
_2910
mRNA
_2911
mRNA
_2912
mRNA
_2913
11277
11278
11279
11280
11281
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
+0.8
-0.4
-2.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.0
-0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
-0.3
-0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-0.5
+0.2
+0.0
+0.3
-0.9
growth on oleic acid
YNB Glucose
-0.4
+0.2
+0.2
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
-1.3
+0.4
-0.3
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.1
-0.2
-0.2
auxotrophy
Dropout Complete
-0.3
+0.1
+0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
+0.3
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
+0.5
+0.3
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.2
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.3
-0.0
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.3
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.5
+0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.5
-0.0
-0.1
auxotrophy
YNB Glucose
+0.1
+0.2
+0.7
+0.2
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.2
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.4
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.4
-0.4
+1.0
growth on ypd
YPD
+0.3
+0.1
+0.5
-0.0
+0.4
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