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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11279 and 11280 are separated by 365 nucleotides
11280 and 11281 are separated by 288 nucleotides
11281 and 11282 are separated by 4574 nucleotides
11282 and 11283 are separated by 2397 nucleotides
mRNA_2911: 11279 - BLAST ATP-dependent DNA helicase [Trichosporon asahii v..., at 520,470 to 521,587
11279
mRNA_2912: 11280 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 521,953 to 523,755
11280
mRNA_2913: 11281 - K13703 ABHD11 abhydrolase domain-containing protein 11, at 524,044 to 525,341
11281
mRNA_2914: 11282 - Hypothetical Protein, at 529,916 to 530,782
11282
mRNA_2915: 11283 - Hypothetical Protein, at 533,180 to 533,383
11283
Group
Condition
mRNA
_2911
mRNA
_2912
mRNA
_2913
mRNA
_2914
mRNA
_2915
11279
11280
11281
11282
11283
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.4
-2.5
+0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.4
-0.3
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
-0.7
+0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.4
-0.6
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.2
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.7
-0.2
+0.6
auxotrophy
Dropout Complete
+0.2
-0.2
-0.1
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.3
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.3
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose
+0.7
+0.2
-0.8
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
-0.1
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.9
+0.1
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.0
-0.3
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
+0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.4
+1.0
+0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.3
-0.5
-0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.0
-0.1
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
-0.1
+1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.3
-0.3
-0.3
+1.1
growth on ypd
YPD
+0.5
-0.0
+0.4
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.6
-0.5
+0.3
+1.4
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