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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11282 and 11283 are separated by 2397 nucleotides
11283 and 11284 are separated by 8402 nucleotides
11284 and 11285 are separated by 4394 nucleotides
11285 and 11286 are separated by 6479 nucleotides
mRNA_2914: 11282 - Hypothetical Protein, at 529,916 to 530,782
11282
mRNA_2915: 11283 - Hypothetical Protein, at 533,180 to 533,383
11283
mRNA_2916: 11284 - Hypothetical Protein, at 541,786 to 542,097
11284
mRNA_2917: 11285 - Hypothetical Protein, at 546,492 to 547,553
11285
mRNA_2918: 11286 - HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729, at 554,033 to 555,107
11286
Group
Condition
mRNA
_2914
mRNA
_2915
mRNA
_2916
mRNA
_2917
mRNA
_2918
11282
11283
11284
11285
11286
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
N.D.
-0.4
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
N.D.
-0.6
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose
+0.3
-0.1
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.6
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.5
N.D.
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.6
N.D.
-0.3
-0.1
auxotrophy
Dropout Complete
+0.3
-0.3
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.5
N.D.
-0.6
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.5
N.D.
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+1.1
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.7
N.D.
-0.4
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
N.D.
+0.5
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.8
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
N.D.
+0.1
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+1.1
N.D.
-0.1
+0.3
growth on ypd
YPD
+0.1
+0.4
N.D.
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+1.4
N.D.
+0.3
+0.3
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