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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11286 and 11287 are separated by 734 nucleotides
11287 and 11288 are separated by 292 nucleotides
11288 and 11289 are separated by 408 nucleotides
11289 and 11290 are separated by 2411 nucleotides
mRNA_2918: 11286 - HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729, at 554,033 to 555,107
11286
mRNA_2919: 11287 - BLAST Protein FAM186A [Mus musculus] [Rhizoctonia solani], at 555,842 to 558,142
11287
mRNA_2920: 11288 - KOG2234 Predicted UDP-galactose transporter, at 558,435 to 560,436
11288
mRNA_2921: 11289 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 560,845 to 562,189
11289
mRNA_2922: 11290 - K10807 RRM1 ribonucleoside-diphosphate reductase subunit M1, at 564,601 to 568,377
11290
Group
Condition
mRNA
_2918
mRNA
_2919
mRNA
_2920
mRNA
_2921
mRNA
_2922
11286
11287
11288
11289
11290
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.0
-0.4
-0.8
N.D.
auxotrophy
YNB Glucose
-0.1
-0.5
-0.4
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.5
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.8
+0.0
-0.1
N.D.
auxotrophy
Dropout Complete
+0.2
-0.8
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.5
-0.2
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.1
-0.5
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.4
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
-0.9
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.2
-0.3
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
-0.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.4
-0.2
N.D.
growth on ypd
YPD
+0.6
-0.5
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.5
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.1
-0.1
+0.4
N.D.
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