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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11292 and 11293 are separated by 436 nucleotides
11293 and 11294 are separated by 65 nucleotides
11294 and 11295 are separated by 144 nucleotides
11295 and 11296 are separated by 160 nucleotides
mRNA_2924: 11292 - K11663 ZNHIT1, VPS71 zinc finger HIT domain-containing protein 1, at 569,780 to 570,412
11292
mRNA_2925: 11293 - K03030 PSMD14, RPN11, POH1 26S proteasome regulatory subunit N11, at 570,849 to 571,975
11293
mRNA_2926: 11294 - Hypothetical Protein, at 572,041 to 573,157
11294
mRNA_2927: 11295 - K07955 ARL8 ADP-ribosylation factor-like protein 8, at 573,302 to 574,331
11295
mRNA_2928: 11296 - Hypothetical Protein, at 574,492 to 576,496
11296
Group
Condition
mRNA
_2924
mRNA
_2925
mRNA
_2926
mRNA
_2927
mRNA
_2928
11292
11293
11294
11295
11296
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
-0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.6
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.0
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.7
-1.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
-0.6
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.5
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.1
+0.0
growth on ypd
YPD
N.D.
N.D.
+0.2
-0.4
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.4
+0.3
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.1
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
+0.3
+0.2
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