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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11305 and 11306 are separated by 119 nucleotides
11306 and 11307 are separated by 551 nucleotides
11307 and 11308 are separated by 903 nucleotides
11308 and 11309 are separated by 198 nucleotides
mRNA_2937: 11305 - K14521 NAT10, KRE33 N-acetyltransferase 10, at 591,164 to 595,198
11305
mRNA_2938: 11306 - Hypothetical Protein, at 595,318 to 600,734
11306
mRNA_2939: 11307 - K17807 TAM41, MMP37 mitochondrial translocator assembly and maintenance protein 41, at 601,286 to 603,136
11307
mRNA_2940: 11308 - SUPERFAMILY--SSF56300, at 604,040 to 607,064
11308
mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607,263 to 608,329
11309
Group
Condition
mRNA
_2937
mRNA
_2938
mRNA
_2939
mRNA
_2940
mRNA
_2941
11305
11306
11307
11308
11309
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
-0.4
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
N.D.
-0.1
-0.4
growth on ypd
YPD
N.D.
-0.1
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
N.D.
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
+0.4
-0.6
auxotrophy
Dropout Complete
N.D.
-0.2
N.D.
-0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.4
-0.0
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
N.D.
+0.3
+0.4
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