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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11306 and 11307 are separated by 551 nucleotides
11307 and 11308 are separated by 903 nucleotides
11308 and 11309 are separated by 198 nucleotides
11309 and 11310 are separated by 94 nucleotides
mRNA_2938: 11306 - Hypothetical Protein, at 595,318 to 600,734
11306
mRNA_2939: 11307 - K17807 TAM41, MMP37 mitochondrial translocator assembly and maintenance protein 41, at 601,286 to 603,136
11307
mRNA_2940: 11308 - SUPERFAMILY--SSF56300, at 604,040 to 607,064
11308
mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607,263 to 608,329
11309
mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608,424 to 609,485
11310
Group
Condition
mRNA
_2938
mRNA
_2939
mRNA
_2940
mRNA
_2941
mRNA
_2942
11306
11307
11308
11309
11310
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.0
-0.3
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
-0.1
-0.2
growth on ypd
YPD
-0.1
N.D.
+0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.3
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.4
-0.6
+0.5
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.3
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.0
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.2
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.4
-0.6
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.4
-0.0
-0.4
auxotrophy
Dropout Complete
-0.2
N.D.
-0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
+0.0
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.1
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
-0.0
+0.4
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.1
+0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.3
+0.4
-0.3
auxotrophy
YNB Glucose
+0.1
N.D.
+0.1
+0.3
+0.3
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