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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11308 and 11309 are separated by 198 nucleotides
11309 and 11310 are separated by 94 nucleotides
11310 and 11311 are separated by 201 nucleotides
11311 and 11312 are separated by 1055 nucleotides
mRNA_2940: 11308 - SUPERFAMILY--SSF56300, at 604,040 to 607,064
11308
mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607,263 to 608,329
11309
mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608,424 to 609,485
11310
mRNA_2943: 11311 - KOG1902 Putative signal transduction protein involved in RNA splicing, at 609,687 to 613,545
11311
mRNA_2944: 11312 - BLAST Putative CigA protein [Rhizopus microsporus], at 614,601 to 617,050
11312
Group
Condition
mRNA
_2940
mRNA
_2941
mRNA
_2942
mRNA
_2943
mRNA
_2944
11308
11309
11310
11311
11312
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.3
-0.7
-0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.6
+0.2
-0.6
-0.4
growth on ypd
YPD
+0.1
-0.4
-0.1
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.3
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
-0.2
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.4
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.0
-0.4
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.4
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
+0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.2
-0.1
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
+0.0
-0.3
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.6
+0.5
+0.1
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
+0.3
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.2
-0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
-0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
-0.0
-0.1
+0.8
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.4
+0.2
-0.0
auxotrophy
Dropout Complete
-0.1
+0.3
+0.1
-0.1
+0.8
auxotrophy
YNB Glucose
+0.1
+0.3
+0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.4
+0.3
+0.1
+1.7
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