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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11311 and 11312 are separated by 1055 nucleotides
11312 and 11313 are separated by 257 nucleotides
11313 and 11314 are separated by 524 nucleotides
11314 and 11315 are separated by 869 nucleotides
mRNA_2943: 11311 - KOG1902 Putative signal transduction protein involved in RNA splicing, at 609,687 to 613,545
11311
mRNA_2944: 11312 - BLAST Putative CigA protein [Rhizopus microsporus], at 614,601 to 617,050
11312
mRNA_2945: 11313 - K15175 CDC73 parafibromin, at 617,308 to 618,975
11313
mRNA_2946: 11314 - SUPERFAMILY--SSF56112, at 619,500 to 621,824
11314
mRNA_2947: 11315 - Hypothetical Protein, at 622,694 to 625,091
11315
Group
Condition
mRNA
_2943
mRNA
_2944
mRNA
_2945
mRNA
_2946
mRNA
_2947
11311
11312
11313
11314
11315
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
-0.5
-0.2
growth on ypd
YPD
+0.0
-0.3
N.D.
+0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.4
N.D.
+0.1
+0.4
growth on oleic acid
YNB Glucose
+0.2
-0.0
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
N.D.
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.3
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
N.D.
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose
+0.1
+0.3
N.D.
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
N.D.
-0.0
+0.3
auxotrophy
Dropout Complete
-0.1
+0.8
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.4
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.8
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.8
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.8
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.9
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+1.7
N.D.
+0.2
+0.2
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