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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11314 and 11315 are separated by 869 nucleotides
11315 and 11316 are separated by 278 nucleotides
11316 and 11317 are separated by 617 nucleotides
11317 and 11318 are separated by 4485 nucleotides
mRNA_2946: 11314 - SUPERFAMILY--SSF56112, at 619,500 to 621,824
11314
mRNA_2947: 11315 - Hypothetical Protein, at 622,694 to 625,091
11315
mRNA_2948: 11316 - K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18, at 625,370 to 627,125
11316
mRNA_2949: 11317 - K02267 COX6B cytochrome c oxidase subunit 6b, at 627,743 to 628,552
11317
mRNA_2950: 11318 - SUPERFAMILY--SSF56112, at 633,038 to 634,414
11318
Group
Condition
mRNA
_2946
mRNA
_2947
mRNA
_2948
mRNA
_2949
mRNA
_2950
11314
11315
11316
11317
11318
growth on oleic acid
YNB Oleic Acid
-0.5
-0.2
N.D.
-1.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
N.D.
-1.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
N.D.
-2.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.0
N.D.
-0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
N.D.
-0.3
-0.3
auxotrophy
YNB Glucose
-0.2
+0.0
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
-0.7
+0.3
auxotrophy
Dropout Complete
+0.0
-0.2
N.D.
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
N.D.
+0.0
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.1
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
N.D.
+0.2
-0.1
growth on ypd
YPD
+0.0
-0.2
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
N.D.
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
N.D.
+0.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
N.D.
+0.6
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
N.D.
+1.0
+0.2
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