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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11316 and 11317 are separated by 617 nucleotides
11317 and 11318 are separated by 4485 nucleotides
11318 and 11319 are separated by 485 nucleotides
11319 and 11320 are separated by 555 nucleotides
mRNA_2948: 11316 - K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18, at 625,370 to 627,125
11316
mRNA_2949: 11317 - K02267 COX6B cytochrome c oxidase subunit 6b, at 627,743 to 628,552
11317
mRNA_2950: 11318 - SUPERFAMILY--SSF56112, at 633,038 to 634,414
11318
mRNA_2951: 11319 - Hypothetical Protein, at 634,900 to 635,986
11319
mRNA_2952: 11320 - Hypothetical Protein, at 636,542 to 638,719
11320
Group
Condition
mRNA
_2948
mRNA
_2949
mRNA
_2950
mRNA
_2951
mRNA
_2952
11316
11317
11318
11319
11320
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.3
-0.1
+0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-2.1
+0.4
+0.4
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-1.0
-0.0
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.4
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-0.1
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.7
+0.3
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
-0.1
-0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
-0.3
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.2
+0.2
-1.0
auxotrophy
Dropout Complete
N.D.
-0.2
-0.0
+0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.1
-0.3
-0.4
growth on ypd
YPD
N.D.
+0.1
+0.1
-0.2
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.1
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.2
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+1.0
+0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.3
+0.3
-0.0
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