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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11326 and 11327 are separated by 1087 nucleotides
11327 and 11328 are separated by 411 nucleotides
11328 and 11329 are separated by 990 nucleotides
11329 and 11330 are separated by 444 nucleotides
mRNA_2958: 11326 - K17907 ATG9 autophagy-related protein 9, at 647,495 to 650,461
11326
mRNA_2959: 11327 - KOG4554 Protein involved in inorganic phosphate transport, at 651,549 to 652,747
11327
mRNA_2960: 11328 - KOG2617 Citrate synthase, at 653,159 to 654,002
11328
mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654,993 to 657,914
11329
mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860
11330
Group
Condition
mRNA
_2958
mRNA
_2959
mRNA
_2960
mRNA
_2961
mRNA
_2962
11326
11327
11328
11329
11330
auxotrophy
Dropout Complete
-0.2
N.D.
-0.8
-0.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
N.D.
-0.5
-0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.1
-1.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
N.D.
+0.5
-1.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.3
-0.3
-0.5
auxotrophy
YNB Glucose
-0.0
N.D.
-0.0
-0.5
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
N.D.
+0.6
-0.8
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-0.3
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.3
-0.3
-0.6
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.3
-0.4
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.2
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.2
-0.6
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.5
-0.7
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.3
-0.7
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+1.0
-0.9
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.4
-0.2
-0.2
growth on ypd
YPD
-0.1
N.D.
+0.5
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.8
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+1.5
+0.5
+0.1
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