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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11328 and 11329 are separated by 990 nucleotides
11329 and 11330 are separated by 444 nucleotides
11330 and 11331 are separated by 555 nucleotides
11331 and 11332 are separated by 1189 nucleotides
mRNA_2960: 11328 - KOG2617 Citrate synthase, at 653,159 to 654,002
11328
mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654,993 to 657,914
11329
mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860
11330
mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660,416 to 662,957
11331
mRNA_2964: 11332 - K00965 galT, GALT UDPglucose--hexose-1-phosphate uridylyltransferase, at 664,147 to 666,205
11332
Group
Condition
mRNA
_2960
mRNA
_2961
mRNA
_2962
mRNA
_2963
mRNA
_2964
11328
11329
11330
11331
11332
auxotrophy
Dropout Complete
-0.8
-0.7
-0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.0
-0.4
N.D.
+0.2
auxotrophy
YNB Glucose
-0.0
-0.5
-0.7
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.6
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.5
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
-0.2
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-1.1
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.7
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.8
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.6
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.9
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.3
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.7
+0.6
N.D.
+0.5
growth on ypd
YPD
+0.5
+0.1
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.8
+0.0
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
+0.5
+0.1
N.D.
-0.3
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