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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11329 and 11330 are separated by 444 nucleotides
11330 and 11331 are separated by 555 nucleotides
11331 and 11332 are separated by 1189 nucleotides
11332 and 11333 are separated by 496 nucleotides
mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654,993 to 657,914
11329
mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860
11330
mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660,416 to 662,957
11331
mRNA_2964: 11332 - K00965 galT, GALT UDPglucose--hexose-1-phosphate uridylyltransferase, at 664,147 to 666,205
11332
mRNA_2965: 11333 - KOG1721 FOG Zn-finger, at 666,702 to 669,525
11333
Group
Condition
mRNA
_2961
mRNA
_2962
mRNA
_2963
mRNA
_2964
mRNA
_2965
11329
11330
11331
11332
11333
auxotrophy
Dropout Complete
-0.7
-0.3
N.D.
+0.1
-1.3
auxotrophy
YNB Glucose
-0.5
-0.7
N.D.
-0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.5
N.D.
+0.1
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
N.D.
-0.1
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
-0.1
N.D.
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.5
N.D.
+0.1
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.4
N.D.
-0.2
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.2
N.D.
+0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
-0.4
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.4
N.D.
-0.1
-0.7
growth on oleic acid
YNB Oleic Acid
-0.3
-0.6
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.0
N.D.
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.2
N.D.
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
+0.2
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
N.D.
-0.2
-0.9
growth on ypd
YPD
+0.1
-0.0
N.D.
-0.1
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
N.D.
+0.0
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.6
N.D.
+0.5
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
N.D.
-0.3
+0.7
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