Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11329 and 11330 are separated by 444 nucleotides11330 and 11331 are separated by 555 nucleotides11331 and 11332 are separated by 1189 nucleotides11332 and 11333 are separated by 496 nucleotides mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654,993 to 657,914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658,359 to 659,860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660,416 to 662,957 11331 mRNA_2964: 11332 - K00965 galT, GALT UDPglucose--hexose-1-phosphate uridylyltransferase, at 664,147 to 666,205 11332 mRNA_2965: 11333 - KOG1721 FOG Zn-finger, at 666,702 to 669,525 11333
Group Condition mRNA_2961 mRNA_2962 mRNA_2963 mRNA_2964 mRNA_2965
11329 11330 11331 11332 11333
auxotrophy Dropout Complete -0.7 -0.3 N.D. +0.1 -1.3
auxotrophy YNB Glucose -0.5 -0.7 N.D. -0.1 -0.8
auxotrophy YNB Glucose 75mM Methionine -0.5 -0.5 N.D. +0.1 -0.9
ypd buoyancy 40 hrs Low Buoyancy -0.4 -0.1 N.D. -0.1 -1.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.9 -0.1 N.D. -0.1 -0.6
auxotrophy YNB Glucose 75mM Arginine -0.3 -0.5 N.D. +0.1 -0.8
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.4 N.D. -0.2 -1.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.7 -0.2 N.D. +0.1 -0.5
growth on ricinoleic acid YNB Methylricinoleic Acid -1.0 -0.4 N.D. +0.2 -0.1
growth on oleic acid YNB Glucose -0.0 -0.4 N.D. -0.1 -0.7
growth on oleic acid YNB Oleic Acid -0.3 -0.6 N.D. -0.1 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.8 -0.0 N.D. +0.0 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 +0.2 N.D. +0.1 -0.8
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.1 +0.2 N.D. +0.0 -0.1
growth on ricinoleic acid YNB Glucose -0.4 -0.2 N.D. +0.1 -0.5
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.2 N.D. -0.2 -0.9
growth on ypd YPD +0.1 -0.0 N.D. -0.1 -0.7
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.2 N.D. -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.3 N.D. +0.0 -0.7
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 +0.6 N.D. +0.5 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 +0.1 N.D. -0.3 +0.7
remove
mRNA_2961
plot
remove
mRNA_2962
plot
remove
mRNA_2963
remove
mRNA_2964
plot
remove
mRNA_2965
plot