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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11335 and 11336 are separated by 155 nucleotides
11336 and 11337 are separated by 273 nucleotides
11337 and 11338 are separated by 305 nucleotides
11338 and 11339 are separated by 80 nucleotides
mRNA_2967: 11335 - Hypothetical Protein, at 671,807 to 673,227
11335
mRNA_2968: 11336 - Hypothetical Protein, at 673,383 to 681,780
11336
mRNA_2969: 11337 - Hypothetical Protein, at 682,054 to 682,344
11337
mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682,650 to 684,031
11338
mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684,112 to 685,866
11339
Group
Condition
mRNA
_2967
mRNA
_2968
mRNA
_2969
mRNA
_2970
mRNA
_2971
11335
11336
11337
11338
11339
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.3
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.0
+0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
-0.0
-0.2
+0.1
growth on ypd
YPD
+0.2
+0.0
-0.0
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.3
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
-0.1
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.4
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.2
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
-0.0
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose
+0.6
+0.2
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
-0.4
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.1
+0.0
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.2
+0.0
-0.1
+0.1
auxotrophy
Dropout Complete
+0.7
+0.2
-0.0
-0.2
+0.3
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.2
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.5
+0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.1
+0.4
+1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.5
+0.3
+1.2
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