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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11339 and 11340 are separated by 269 nucleotides
11340 and 11341 are separated by 44 nucleotides
11341 and 11342 are separated by 456 nucleotides
11342 and 11343 are separated by 723 nucleotides
mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684,112 to 685,866
11339
mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686,136 to 688,131
11340
mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688,176 to 690,178
11341
mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690,635 to 692,698
11342
mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693,422 to 694,637
11343
Group
Condition
mRNA
_2971
mRNA
_2972
mRNA
_2973
mRNA
_2974
mRNA
_2975
11339
11340
11341
11342
11343
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-2.8
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.7
-0.7
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-1.2
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.5
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.2
-0.6
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.6
-0.2
+0.4
growth on ypd
YPD
-0.0
+0.2
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.0
+0.3
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
+0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
+0.4
+0.1
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose
+0.2
+0.0
+0.5
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.6
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.7
+0.2
-0.1
auxotrophy
Dropout Complete
+0.3
-0.0
+0.4
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.2
-0.0
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.3
+0.8
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
+0.5
+0.1
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
+1.0
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
+0.3
+0.7
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
+1.4
+0.2
+0.2
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