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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11341 and 11342 are separated by 456 nucleotides
11342 and 11343 are separated by 723 nucleotides
11343 and 11344 are separated by 279 nucleotides
11344 and 11345 are separated by 656 nucleotides
mRNA_2973: 11341 - K11996 MOCS3, UBA4 adenylyltransferase and sulfurtransferase, at 688,176 to 690,178
11341
mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690,635 to 692,698
11342
mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693,422 to 694,637
11343
mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694,917 to 696,801
11344
mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697,458 to 698,969
11345
Group
Condition
mRNA
_2973
mRNA
_2974
mRNA
_2975
mRNA
_2976
mRNA
_2977
11341
11342
11343
11344
11345
ypd buoyancy
40 hrs Low Buoyancy
-2.8
-0.1
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.4
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.3
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.0
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.2
+0.4
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
-0.3
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.2
+0.2
+0.3
N.D.
growth on ypd
YPD
+0.2
-0.1
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose
+0.5
-0.2
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.2
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.2
+0.2
-0.2
N.D.
auxotrophy
Dropout Complete
+0.4
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.2
-0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.8
+0.0
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.3
-0.2
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+1.0
+0.0
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.4
+0.2
+0.2
-0.4
N.D.
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