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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11342 and 11343 are separated by 723 nucleotides
11343 and 11344 are separated by 279 nucleotides
11344 and 11345 are separated by 656 nucleotides
11345 and 11346 are separated by 125 nucleotides
mRNA_2974: 11342 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 690,635 to 692,698
11342
mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693,422 to 694,637
11343
mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694,917 to 696,801
11344
mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697,458 to 698,969
11345
mRNA_2978: 11346 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 699,095 to 700,907
11346
Group
Condition
mRNA
_2974
mRNA
_2975
mRNA
_2976
mRNA
_2977
mRNA
_2978
11342
11343
11344
11345
11346
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.3
-0.2
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
-0.2
+0.2
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.2
N.D.
+0.0
growth on ypd
YPD
-0.1
-0.1
+0.3
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.4
-0.3
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.0
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
+0.1
-0.1
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.5
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.4
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
+0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.3
N.D.
-0.2
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