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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11348 and 11349 are separated by 2046 nucleotides
11349 and 11350 are separated by 2173 nucleotides
11350 and 11351 are separated by 244 nucleotides
11351 and 11352 are separated by 335 nucleotides
mRNA_2980: 11348 - KOG3140 Predicted membrane protein, at 23 to 1,444
11348
mRNA_2981: 11349 - SUPERFAMILY--SSF50685, at 3,491 to 5,123
11349
mRNA_2982: 11350 - Hypothetical Protein, at 7,297 to 8,646
11350
mRNA_2983: 11351 - K00993 EPT1 ethanolaminephosphotransferase, at 8,891 to 11,294
11351
mRNA_2984: 11352 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 11,630 to 12,169
11352
Group
Condition
mRNA
_2980
mRNA
_2981
mRNA
_2982
mRNA
_2983
mRNA
_2984
11348
11349
11350
11351
11352
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.2
-0.1
-0.4
auxotrophy
YNB Glucose
+0.3
-0.0
-0.8
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.0
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
-0.4
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
-0.1
-0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.1
+0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
-0.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
-0.3
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.4
-0.7
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.5
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.2
-0.6
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
-0.3
+0.2
-0.1
auxotrophy
Dropout Complete
+0.4
+0.2
-0.6
-0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
-0.4
+0.2
-0.2
growth on ypd
YPD
+0.2
-0.1
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.5
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
+0.1
+0.3
+0.4
growth on oleic acid
YNB Glucose
+0.4
+0.3
-0.3
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.6
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.3
+0.5
+0.3
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