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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11349 and 11350 are separated by 2173 nucleotides
11350 and 11351 are separated by 244 nucleotides
11351 and 11352 are separated by 335 nucleotides
11352 and 11353 are separated by 484 nucleotides
mRNA_2981: 11349 - SUPERFAMILY--SSF50685, at 3,491 to 5,123
11349
mRNA_2982: 11350 - Hypothetical Protein, at 7,297 to 8,646
11350
mRNA_2983: 11351 - K00993 EPT1 ethanolaminephosphotransferase, at 8,891 to 11,294
11351
mRNA_2984: 11352 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 11,630 to 12,169
11352
mRNA_2985: 11353 - KOG1203 Predicted dehydrogenase, at 12,654 to 13,709
11353
Group
Condition
mRNA
_2981
mRNA
_2982
mRNA
_2983
mRNA
_2984
mRNA
_2985
11349
11350
11351
11352
11353
auxotrophy
YNB Glucose
-0.0
-0.8
-0.2
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
+0.0
-0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.7
-0.2
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.6
-0.2
+0.3
-0.4
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.1
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
-0.2
-0.2
-0.1
auxotrophy
Dropout Complete
+0.2
-0.6
-0.1
+0.5
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.0
-0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.2
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.4
+0.2
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.0
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.1
-0.2
+0.1
growth on oleic acid
YNB Glucose
+0.3
-0.3
-0.0
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.2
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.5
+0.3
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.5
+0.2
+0.1
-0.0
growth on ypd
YPD
-0.1
+0.2
-0.1
+0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
+0.3
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.5
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.6
+0.2
+0.3
+0.3
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