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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11351 and 11352 are separated by 335 nucleotides
11352 and 11353 are separated by 484 nucleotides
11353 and 11354 are separated by 504 nucleotides
11354 and 11355 are separated by 100 nucleotides
mRNA_2983: 11351 - K00993 EPT1 ethanolaminephosphotransferase, at 8,891 to 11,294
11351
mRNA_2984: 11352 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 11,630 to 12,169
11352
mRNA_2985: 11353 - KOG1203 Predicted dehydrogenase, at 12,654 to 13,709
11353
mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14,214 to 16,255
11354
mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16,356 to 17,605
11355
Group
Condition
mRNA
_2983
mRNA
_2984
mRNA
_2985
mRNA
_2986
mRNA
_2987
11351
11352
11353
11354
11355
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
-0.7
-0.5
+0.0
auxotrophy
YNB Glucose
-0.2
+0.1
-0.4
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.3
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.4
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
-0.0
-0.0
+0.1
auxotrophy
Dropout Complete
-0.1
+0.5
-0.6
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
+0.2
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.3
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.6
-0.4
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.0
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.3
+0.0
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
+0.3
+0.4
+0.2
growth on ypd
YPD
-0.1
+0.3
+0.5
+0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
+0.5
+0.3
+0.2
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