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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11353 and 11354 are separated by 504 nucleotides
11354 and 11355 are separated by 100 nucleotides
11355 and 11356 are separated by 246 nucleotides
11356 and 11357 are separated by 71 nucleotides
mRNA_2985: 11353 - KOG1203 Predicted dehydrogenase, at 12,654 to 13,709
11353
mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14,214 to 16,255
11354
mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16,356 to 17,605
11355
mRNA_2988: 11356 - KOG1212 Amidases, at 17,852 to 19,907
11356
mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19,979 to 21,478
11357
Group
Condition
mRNA
_2985
mRNA
_2986
mRNA
_2987
mRNA
_2988
mRNA
_2989
11353
11354
11355
11356
11357
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.5
+0.0
-0.3
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.5
+0.1
+0.1
-0.6
auxotrophy
YNB Glucose
-0.4
-0.4
-0.1
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
-0.1
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
-0.1
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.3
+0.2
+0.0
-0.3
auxotrophy
Dropout Complete
-0.6
-0.1
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.1
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.2
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.1
-0.0
-0.0
growth on oleic acid
YNB Glucose
-0.4
+0.3
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.2
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
+0.1
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.4
+0.2
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.5
+0.1
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.4
+0.2
+0.6
-0.2
growth on ypd
YPD
+0.5
+0.5
+0.3
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.3
+0.2
+0.3
+0.1
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