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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11357 and 11358 are separated by 322 nucleotides
11358 and 11359 are separated by 377 nucleotides
11359 and 11360 are separated by 593 nucleotides
11360 and 11361 are separated by 1121 nucleotides
mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19,979 to 21,478
11357
mRNA_2990: 11358 - SUPERFAMILY--SSF52047, at 21,801 to 25,370
11358
mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25,748 to 27,268
11359
mRNA_2992: 11360 - Hypothetical Protein, at 27,862 to 28,502
11360
mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29,624 to 29,993
11361
Group
Condition
mRNA
_2989
mRNA
_2990
mRNA
_2991
mRNA
_2992
mRNA
_2993
11357
11358
11359
11360
11361
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-2.3
+0.1
+0.1
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-2.2
-0.1
+0.1
-0.5
growth on ypd
YPD
-0.1
-0.9
-0.2
-0.4
-1.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-2.6
+0.2
-0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.7
-0.0
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.8
+0.1
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.9
+0.1
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.2
+0.2
+0.0
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.9
+0.1
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.6
+0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-1.0
+0.3
-0.3
+0.0
growth on oleic acid
YNB Glucose
-0.1
-1.0
+0.2
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.1
+0.6
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.1
+0.0
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.6
-0.1
+0.2
-0.2
auxotrophy
Dropout Complete
+0.0
-1.1
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose
-0.2
-0.5
+0.2
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
-0.3
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
+0.1
+0.6
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.2
+0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
-0.0
+0.4
+0.1
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