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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11359 and 11360 are separated by 593 nucleotides
11360 and 11361 are separated by 1121 nucleotides
11361 and 11362 are separated by 124 nucleotides
11362 and 11363 are separated by 254 nucleotides
mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25,748 to 27,268
11359
mRNA_2992: 11360 - Hypothetical Protein, at 27,862 to 28,502
11360
mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29,624 to 29,993
11361
mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30,118 to 34,295
11362
mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34,550 to 37,704
11363
Group
Condition
mRNA
_2991
mRNA
_2992
mRNA
_2993
mRNA
_2994
mRNA
_2995
11359
11360
11361
11362
11363
growth on ypd
YPD
-0.2
-0.4
-1.5
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.3
+0.0
-1.5
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-1.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
-0.7
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.6
-1.2
-0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.5
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.2
+0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.7
+0.1
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+0.5
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.5
+0.0
+0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.5
-0.4
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.2
+0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.6
-0.1
+1.1
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.2
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.3
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.6
-0.2
+0.1
+0.1
auxotrophy
Dropout Complete
+0.4
+0.0
-0.1
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.4
+0.2
+0.1
auxotrophy
YNB Glucose
+0.2
-0.1
-0.0
+0.1
+0.9
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