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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11361 and 11362 are separated by 124 nucleotides
11362 and 11363 are separated by 254 nucleotides
11363 and 11364 are separated by 115 nucleotides
11364 and 11365 are separated by 173 nucleotides
mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29,624 to 29,993
11361
mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30,118 to 34,295
11362
mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34,550 to 37,704
11363
mRNA_2996: 11364 - Hypothetical Protein, at 37,820 to 39,043
11364
mRNA_2997: 11365 - K14768 UTP7, WDR46 U3 small nucleolar RNA-associated protein 7, at 39,217 to 41,331
11365
Group
Condition
mRNA
_2993
mRNA
_2994
mRNA
_2995
mRNA
_2996
mRNA
_2997
11361
11362
11363
11364
11365
growth on ypd
YPD
-1.5
-0.1
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-1.5
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-0.0
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.0
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.1
+0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.4
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.3
+0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.0
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.0
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.0
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.1
+1.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.2
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
+0.1
+0.9
N.D.
N.D.
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