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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11364 and 11365 are separated by 173 nucleotides
11365 and 11366 are separated by 182 nucleotides
11366 and 11367 are separated by 376 nucleotides
11367 and 11368 are separated by 371 nucleotides
mRNA_2996: 11364 - Hypothetical Protein, at 37,820 to 39,043
11364
mRNA_2997: 11365 - K14768 UTP7, WDR46 U3 small nucleolar RNA-associated protein 7, at 39,217 to 41,331
11365
mRNA_2998: 11366 - KOG3383 Uncharacterized conserved protein, at 41,514 to 42,818
11366
mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43,195 to 45,486
11367
mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45,858 to 47,909
11368
Group
Condition
mRNA
_2996
mRNA
_2997
mRNA
_2998
mRNA
_2999
mRNA
_3000
11364
11365
11366
11367
11368
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.7
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.4
+0.3
-0.2
growth on ypd
YPD
N.D.
N.D.
+0.0
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
+0.4
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.0
+0.3
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.0
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
+0.0
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
+0.5
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.5
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.6
+0.5
-0.2
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