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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11367 and 11368 are separated by 371 nucleotides
11368 and 11369 are separated by 292 nucleotides
11369 and 11370 are separated by 43 nucleotides
11370 and 11371 are separated by 586 nucleotides
mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43,195 to 45,486
11367
mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45,858 to 47,909
11368
mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48,202 to 49,332
11369
mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49,376 to 50,038
11370
mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50,625 to 53,414
11371
Group
Condition
mRNA
_2999
mRNA
_3000
mRNA
_3001
mRNA
_3002
mRNA
_3003
11367
11368
11369
11370
11371
growth on ypd
YPD
-0.2
-0.1
-0.4
-0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.1
-0.7
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.3
-0.4
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.1
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.0
-0.1
+0.1
auxotrophy
Dropout Complete
+0.5
+0.0
+0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
-0.1
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
+0.5
-0.1
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
+0.2
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
+0.2
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.2
+0.2
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
+0.3
+0.5
+0.1
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