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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11369 and 11370 are separated by 43 nucleotides
11370 and 11371 are separated by 586 nucleotides
11371 and 11372 are separated by 166 nucleotides
11372 and 11373 are separated by 630 nucleotides
mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48,202 to 49,332
11369
mRNA_3002: 11370 - HMMPfam-Fungal specific transcription factor domain-PF11951, at 49,376 to 50,038
11370
mRNA_3003: 11371 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 50,625 to 53,414
11371
mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53,581 to 54,123
11372
mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54,754 to 56,074
11373
Group
Condition
mRNA
_3001
mRNA
_3002
mRNA
_3003
mRNA
_3004
mRNA
_3005
11369
11370
11371
11372
11373
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.7
-0.7
N.D.
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
-0.1
N.D.
-2.2
growth on ypd
YPD
-0.4
-0.6
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
+0.1
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
+0.1
N.D.
-0.8
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.1
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.1
N.D.
-0.3
auxotrophy
Dropout Complete
+0.2
-0.3
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose
+0.2
-0.2
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.0
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.5
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
+0.1
N.D.
+0.1
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