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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11375 and 11376 are separated by 250 nucleotides
11376 and 11377 are separated by 186 nucleotides
11377 and 11378 are separated by 381 nucleotides
11378 and 11379 are separated by 2207 nucleotides
mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57,781 to 59,867
11375
mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60,118 to 65,560
11376
mRNA_3009: 11377 - Hypothetical Protein, at 65,747 to 66,498
11377
mRNA_3010: 11378 - K10398 KIF11, EG5 kinesin family member 11, at 66,880 to 69,062
11378
mRNA_3011: 11379 - K19177 NUS1 dehydrodolichyl diphosphate syntase complex subunit NUS1, at 71,270 to 72,413
11379
Group
Condition
mRNA
_3007
mRNA
_3008
mRNA
_3009
mRNA
_3010
mRNA
_3011
11375
11376
11377
11378
11379
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.0
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
-0.4
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.2
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.1
+0.6
N.D.
growth on ypd
YPD
N.D.
-0.1
-0.4
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.1
-0.0
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.0
+0.3
N.D.
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