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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11376 and 11377 are separated by 186 nucleotides
11377 and 11378 are separated by 381 nucleotides
11378 and 11379 are separated by 2207 nucleotides
11379 and 11380 are separated by 429 nucleotides
mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60,118 to 65,560
11376
mRNA_3009: 11377 - Hypothetical Protein, at 65,747 to 66,498
11377
mRNA_3010: 11378 - K10398 KIF11, EG5 kinesin family member 11, at 66,880 to 69,062
11378
mRNA_3011: 11379 - K19177 NUS1 dehydrodolichyl diphosphate syntase complex subunit NUS1, at 71,270 to 72,413
11379
mRNA_3012: 11380 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 72,843 to 74,660
11380
Group
Condition
mRNA
_3008
mRNA
_3009
mRNA
_3010
mRNA
_3011
mRNA
_3012
11376
11377
11378
11379
11380
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.2
N.D.
-3.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.1
+0.6
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.1
N.D.
-0.6
growth on ypd
YPD
-0.1
-0.4
+0.4
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
+0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.3
N.D.
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.2
N.D.
+0.6
growth on oleic acid
YNB Glucose
+0.2
-0.3
-0.1
N.D.
+0.7
auxotrophy
YNB Glucose
-0.4
+0.1
+0.0
N.D.
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.0
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.1
N.D.
+0.5
auxotrophy
Dropout Complete
-0.1
+0.1
+0.1
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.3
N.D.
+0.7
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
+0.1
N.D.
+1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.3
N.D.
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.2
N.D.
+1.1
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