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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11383 and 11384 are separated by 223 nucleotides
11384 and 11385 are separated by 1382 nucleotides
11385 and 11386 are separated by 12604 nucleotides
11386 and 11387 are separated by 15601 nucleotides
mRNA_3015: 11383 - KOG3252 Uncharacterized conserved protein, at 79,756 to 80,863
11383
mRNA_3016: 11384 - Hypothetical Protein, at 81,087 to 81,376
11384
mRNA_3017: 11385 - Hypothetical Protein, at 82,759 to 83,226
11385
mRNA_3018: 11386 - Hypothetical Protein, at 95,831 to 96,130
11386
mRNA_3019: 11387 - KOG2128 Ras GTPase-activating protein family - IQGAP, at 111,732 to 112,142
11387
Group
Condition
mRNA
_3015
mRNA
_3016
mRNA
_3017
mRNA
_3018
mRNA
_3019
11383
11384
11385
11386
11387
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.3
N.D.
N.D.
-1.3
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
N.D.
N.D.
-1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
N.D.
N.D.
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
+0.2
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
-0.1
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
N.D.
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
N.D.
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.0
N.D.
N.D.
+0.2
growth on ypd
YPD
+2.3
-0.2
N.D.
N.D.
-2.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
-0.1
N.D.
N.D.
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
N.D.
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.3
+0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.1
N.D.
N.D.
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
+0.6
-0.1
N.D.
N.D.
-0.0
auxotrophy
Dropout Complete
+1.3
-0.2
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.9
-0.1
N.D.
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+1.0
-0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+1.2
+0.2
N.D.
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
N.D.
N.D.
+2.2
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