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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11385 and 11386 are separated by 12604 nucleotides
11386 and 11387 are separated by 15601 nucleotides
11387 and 11388 are separated by 2550 nucleotides
11388 and 11389 are separated by 324 nucleotides
mRNA_3017: 11385 - Hypothetical Protein, at 82,759 to 83,226
11385
mRNA_3018: 11386 - Hypothetical Protein, at 95,831 to 96,130
11386
mRNA_3019: 11387 - KOG2128 Ras GTPase-activating protein family - IQGAP, at 111,732 to 112,142
11387
mRNA_3020: 11388 - Hypothetical Protein, at 114,693 to 115,018
11388
mRNA_3021: 11389 - K00697 otsA trehalose 6-phosphate synthase, at 115,343 to 117,642
11389
Group
Condition
mRNA
_3017
mRNA
_3018
mRNA
_3019
mRNA
_3020
mRNA
_3021
11385
11386
11387
11388
11389
growth on ypd
YPD
N.D.
N.D.
-2.4
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.8
N.D.
-0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.7
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.3
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.8
N.D.
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.5
N.D.
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
N.D.
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.2
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-1.5
N.D.
+1.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.9
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+2.2
N.D.
-0.9
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