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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11391 and 11392 are separated by 155 nucleotides
11392 and 11393 are separated by 520 nucleotides
11393 and 11394 are separated by 664 nucleotides
11394 and 11395 are separated by 915 nucleotides
mRNA_3023: 11391 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 119,242 to 120,921
11391
mRNA_3024: 11392 - K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2, at 121,077 to 122,686
11392
mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123,207 to 127,605
11393
mRNA_3026: 11394 - Hypothetical Protein, at 128,270 to 129,253
11394
mRNA_3027: 11395 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 130,169 to 132,601
11395
Group
Condition
mRNA
_3023
mRNA
_3024
mRNA
_3025
mRNA
_3026
mRNA
_3027
11391
11392
11393
11394
11395
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.2
-0.3
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-0.1
-0.2
N.D.
growth on ypd
YPD
N.D.
-0.2
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.1
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.0
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.2
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
-0.1
N.D.
auxotrophy
Dropout Complete
N.D.
+0.0
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.1
-0.1
N.D.
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