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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11393 and 11394 are separated by 664 nucleotides
11394 and 11395 are separated by 915 nucleotides
11395 and 11396 are separated by 397 nucleotides
11396 and 11397 are separated by 338 nucleotides
mRNA_3025: 11393 - K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1, at 123,207 to 127,605
11393
mRNA_3026: 11394 - Hypothetical Protein, at 128,270 to 129,253
11394
mRNA_3027: 11395 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 130,169 to 132,601
11395
mRNA_3028: 11396 - Hypothetical Protein, at 132,999 to 134,584
11396
mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134,923 to 137,066
11397
Group
Condition
mRNA
_3025
mRNA
_3026
mRNA
_3027
mRNA
_3028
mRNA
_3029
11393
11394
11395
11396
11397
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
N.D.
-0.1
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose
-0.1
-0.2
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.3
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
N.D.
+0.0
-0.3
growth on ypd
YPD
+0.2
-0.2
N.D.
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
N.D.
+0.1
-0.3
auxotrophy
Dropout Complete
-0.0
+0.2
N.D.
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.3
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
N.D.
+0.3
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
N.D.
+0.2
+0.1
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