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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11395 and 11396 are separated by 397 nucleotides
11396 and 11397 are separated by 338 nucleotides
11397 and 11398 are separated by 325 nucleotides
11398 and 11399 are separated by 471 nucleotides
mRNA_3027: 11395 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 130,169 to 132,601
11395
mRNA_3028: 11396 - Hypothetical Protein, at 132,999 to 134,584
11396
mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134,923 to 137,066
11397
mRNA_3030: 11398 - Hypothetical Protein, at 137,392 to 137,958
11398
mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138,430 to 140,039
11399
Group
Condition
mRNA
_3027
mRNA
_3028
mRNA
_3029
mRNA
_3030
mRNA
_3031
11395
11396
11397
11398
11399
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-1.0
-1.0
+0.0
growth on ypd
YPD
N.D.
-0.3
+0.0
-0.8
-0.5
auxotrophy
Dropout Complete
N.D.
-0.1
-0.3
-0.8
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.4
-1.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.3
-0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.3
-0.2
-0.3
auxotrophy
YNB Glucose
N.D.
-0.2
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.2
-0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.0
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.1
-0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.5
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.3
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.2
+0.0
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.2
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.4
+1.6
+0.2
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