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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11397 and 11398 are separated by 325 nucleotides
11398 and 11399 are separated by 471 nucleotides
11399 and 11400 are separated by 433 nucleotides
11400 and 11401 are separated by 524 nucleotides
mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134,923 to 137,066
11397
mRNA_3030: 11398 - Hypothetical Protein, at 137,392 to 137,958
11398
mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138,430 to 140,039
11399
mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140,473 to 143,328
11400
mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143,853 to 146,672
11401
Group
Condition
mRNA
_3029
mRNA
_3030
mRNA
_3031
mRNA
_3032
mRNA
_3033
11397
11398
11399
11400
11401
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-1.1
+0.1
N.D.
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-1.0
+0.0
N.D.
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
-0.2
N.D.
-1.7
auxotrophy
Dropout Complete
-0.3
-0.8
-0.2
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
+0.2
-0.5
-0.3
N.D.
-1.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
-0.4
N.D.
-0.6
auxotrophy
YNB Glucose
-0.1
-0.3
-0.1
N.D.
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.5
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.1
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.6
+0.3
N.D.
-0.3
growth on ypd
YPD
+0.0
-0.8
-0.5
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
-0.1
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
+0.0
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.1
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.1
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+1.6
+0.2
N.D.
+0.1
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