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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11398 and 11399 are separated by 471 nucleotides
11399 and 11400 are separated by 433 nucleotides
11400 and 11401 are separated by 524 nucleotides
11401 and 11402 are separated by 1720 nucleotides
mRNA_3030: 11398 - Hypothetical Protein, at 137,392 to 137,958
11398
mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138,430 to 140,039
11399
mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140,473 to 143,328
11400
mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143,853 to 146,672
11401
mRNA_3034: 11402 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 148,393 to 151,658
11402
Group
Condition
mRNA
_3030
mRNA
_3031
mRNA
_3032
mRNA
_3033
mRNA
_3034
11398
11399
11400
11401
11402
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
+0.1
N.D.
-1.9
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.5
N.D.
-0.6
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
N.D.
-1.7
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
-0.3
N.D.
-1.3
+0.2
growth on ypd
YPD
-0.8
-0.5
N.D.
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.0
N.D.
-1.0
+0.8
auxotrophy
Dropout Complete
-0.8
-0.2
N.D.
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
N.D.
-0.4
-0.5
auxotrophy
YNB Glucose
-0.3
-0.1
N.D.
-0.9
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.4
N.D.
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
N.D.
-1.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.3
N.D.
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.7
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
N.D.
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
N.D.
-0.5
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
N.D.
-0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
N.D.
+0.4
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.6
+0.2
N.D.
+0.1
+0.1
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