Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 11399 and 11400 are separated by 433 nucleotides11400 and 11401 are separated by 524 nucleotides11401 and 11402 are separated by 1720 nucleotides11402 and 11403 are separated by 317 nucleotides mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138,430 to 140,039 11399 mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140,473 to 143,328 11400 mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143,853 to 146,672 11401 mRNA_3034: 11402 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 148,393 to 151,658 11402 mRNA_3035: 11403 - K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit, at 151,976 to 152,968 11403
Group Condition mRNA_3031 mRNA_3032 mRNA_3033 mRNA_3034 mRNA_3035
11399 11400 11401 11402 11403
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -1.7 +0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 N.D. -0.6 -0.6 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 N.D. -1.9 +0.2 N.D.
growth on ricinoleic acid YNB Glucose -0.3 N.D. -1.3 +0.2 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.0 N.D. -1.1 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 N.D. -0.4 -0.5 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 N.D. -0.4 -0.2 N.D.
auxotrophy YNB Glucose -0.1 N.D. -0.9 +0.4 N.D.
growth on ypd YPD -0.5 N.D. +0.3 -0.4 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.4 N.D. -0.6 +0.4 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. -0.7 +0.3 N.D.
auxotrophy Dropout Complete -0.2 N.D. -0.6 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 N.D. -0.2 -0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 N.D. -0.6 +0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.0 N.D. -1.0 +0.8 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.3 N.D. -0.3 -0.1 N.D.
growth on oleic acid YNB Oleic Acid -0.1 N.D. -0.5 +0.5 N.D.
growth on oleic acid YNB Glucose +0.1 N.D. -0.5 +0.2 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. +0.1 +0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 N.D. +0.1 +0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. +0.4 +0.4 N.D.
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