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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11401 and 11402 are separated by 1720 nucleotides
11402 and 11403 are separated by 317 nucleotides
11403 and 11404 are separated by 320 nucleotides
11404 and 11405 are separated by 368 nucleotides
mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143,853 to 146,672
11401
mRNA_3034: 11402 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 148,393 to 151,658
11402
mRNA_3035: 11403 - K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit, at 151,976 to 152,968
11403
mRNA_3036: 11404 - Hypothetical Protein, at 153,289 to 156,377
11404
mRNA_3037: 11405 - Hypothetical Protein, at 156,746 to 157,530
11405
Group
Condition
mRNA
_3033
mRNA
_3034
mRNA
_3035
mRNA
_3036
mRNA
_3037
11401
11402
11403
11404
11405
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
+0.2
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.7
+0.1
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-1.3
+0.2
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.6
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose
-0.9
+0.4
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.5
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.1
+0.3
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
N.D.
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.8
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.2
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.3
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.1
-0.0
auxotrophy
Dropout Complete
-0.6
+0.4
N.D.
+0.2
-0.2
growth on oleic acid
YNB Glucose
-0.5
+0.2
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.4
N.D.
+0.1
-0.1
growth on ypd
YPD
+0.3
-0.4
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
N.D.
+0.0
+0.4
growth on oleic acid
YNB Oleic Acid
-0.5
+0.5
N.D.
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.4
N.D.
-0.1
+0.3
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