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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11408 and 11409 are separated by 1271 nucleotides
11409 and 11410 are separated by 1387 nucleotides
11410 and 11411 are separated by 303 nucleotides
11411 and 11412 are separated by 1025 nucleotides
mRNA_3040: 11408 - K17275 PLS1 plastin-1, at 164,387 to 167,396
11408
mRNA_3041: 11409 - KOG0252 Inorganic phosphate transporter, at 168,668 to 171,245
11409
mRNA_3042: 11410 - KOG0252 Inorganic phosphate transporter, at 172,633 to 175,207
11410
mRNA_3043: 11411 - K18159 NDUFAF1, CIA30 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1, at 175,511 to 176,675
11411
mRNA_3044: 11412 - K11771 SWI1, ADR6 SWI/SNF chromatin-remodeling complex subunit SWI1, at 177,701 to 181,469
11412
Group
Condition
mRNA
_3040
mRNA
_3041
mRNA
_3042
mRNA
_3043
mRNA
_3044
11408
11409
11410
11411
11412
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
-0.3
N.D.
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.1
-0.7
N.D.
-1.7
growth on oleic acid
YNB Oleic Acid
+0.4
-0.2
+0.1
N.D.
-1.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-0.0
-0.2
N.D.
+0.5
auxotrophy
YNB Glucose
-0.3
+0.2
-0.2
N.D.
-0.7
auxotrophy
Dropout Complete
-0.5
-0.1
+0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.6
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.2
+0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.0
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.0
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.2
-0.0
-0.2
N.D.
-0.3
growth on ypd
YPD
+0.1
+0.1
-0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.6
+0.1
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.2
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
-0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.4
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
+0.1
-0.1
N.D.
+0.2
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