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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11412 and 11413 are separated by 1478 nucleotides
11413 and 11414 are separated by 370 nucleotides
11414 and 11415 are separated by 619 nucleotides
11415 and 11416 are separated by 393 nucleotides
mRNA_3044: 11412 - K11771 SWI1, ADR6 SWI/SNF chromatin-remodeling complex subunit SWI1, at 177,701 to 181,469
11412
mRNA_3045: 11413 - Hypothetical Protein, at 182,948 to 183,820
11413
mRNA_3046: 11414 - Hypothetical Protein, at 184,191 to 185,834
11414
mRNA_3047: 11415 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 186,454 to 188,264
11415
mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188,658 to 190,471
11416
Group
Condition
mRNA
_3044
mRNA
_3045
mRNA
_3046
mRNA
_3047
mRNA
_3048
11412
11413
11414
11415
11416
growth on oleic acid
YNB Oleic Acid
-1.5
-0.0
+0.2
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.7
+0.2
-0.0
+0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.4
-0.5
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
+0.2
-0.1
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
-0.3
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.3
-0.1
+0.2
auxotrophy
Dropout Complete
-0.4
-0.1
-0.4
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
+0.4
-0.6
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose
-0.7
+0.1
+0.0
+0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.3
+0.2
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.4
-0.5
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
-0.1
+0.5
+0.0
growth on oleic acid
YNB Glucose
-0.3
+0.4
+0.1
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.2
-0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.1
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
+0.2
+0.3
-0.1
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