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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11414 and 11415 are separated by 619 nucleotides
11415 and 11416 are separated by 393 nucleotides
11416 and 11417 are separated by 285 nucleotides
11417 and 11418 are separated by 374 nucleotides
mRNA_3046: 11414 - Hypothetical Protein, at 184,191 to 185,834
11414
mRNA_3047: 11415 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 186,454 to 188,264
11415
mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188,658 to 190,471
11416
mRNA_3049: 11417 - SUPERFAMILY--SSF50685, at 190,757 to 193,605
11417
mRNA_3050: 11418 - K14430 PHO87_91 phosphate transporter, at 193,980 to 198,261
11418
Group
Condition
mRNA
_3046
mRNA
_3047
mRNA
_3048
mRNA
_3049
mRNA
_3050
11414
11415
11416
11417
11418
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.6
+0.3
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.4
+0.5
-0.0
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.5
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.4
-0.0
N.D.
N.D.
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